Examining brain structures of more basic organisms e.g. Reptiles

That said, the brain and wiring really have been mapped to a large extent.
Yes, it is very complex.
There are good tools that have been developed to sort some of this out.
I have found that absorbing and internalizing this complexity is hard but doable; keep at it.

This is me documenting what I have discovered in my journey to understand this spaghetti tangle.

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