I should point out that TBT currently also relies on the “output layer” concept from the Columns paper. If you question the validity of this concept, then you must also question TBT itself (at least in the theory’s current form) From the Frameworks paper, section " Rethinking Hierarchy, the Thousand Brains Theory of Intelligence":
The reference to “Lewis et al. 2018” is the Columns Plus paper, which goes into more technical detail on object recognition and grid cells. From this paper, it discusses the method of voting between many sensory patches:
This “additional population of cells” is of course is a reference to the output layer described in the Columns paper. Hopefully this demonstrates that what I have described above isn’t a major deviation from TBT, but rather it borrows a concept from it.